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EBV identification using fastv. The EBV genome has a large repetitive region between 12 kb and 35 kb. The coverage result generated by fastv (A) shows even coverage of this region and is similar to the IGV visualization of the BWA alignment result (B). The data used in this experiment was whole genome sequencing of an EBV-positive sample, downloaded from <t>NCBI</t> Sequence Read Archive (SRA accession: ERR1293949).
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EBV identification using fastv. The EBV genome has a large repetitive region between 12 kb and 35 kb. The coverage result generated by fastv (A) shows even coverage of this region and is similar to the IGV visualization of the BWA alignment result (B). The data used in this experiment was whole genome sequencing of an EBV-positive sample, downloaded from NCBI Sequence Read Archive (SRA accession: ERR1293949).

Journal: Briefings in Bioinformatics

Article Title: A computational toolset for rapid identification of SARS-CoV-2, other viruses and microorganisms from sequencing data

doi: 10.1093/bib/bbaa231

Figure Lengend Snippet: EBV identification using fastv. The EBV genome has a large repetitive region between 12 kb and 35 kb. The coverage result generated by fastv (A) shows even coverage of this region and is similar to the IGV visualization of the BWA alignment result (B). The data used in this experiment was whole genome sequencing of an EBV-positive sample, downloaded from NCBI Sequence Read Archive (SRA accession: ERR1293949).

Article Snippet: The first dataset is the National Center for Biotechnology Information (NCBI) viral genomes RefSeq database [ ], which can be found at https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/ .

Techniques: Generated, Sequencing